Monday, 15 May 2017

Smuggled dino eggs gave birth to ‘baby dragons’



Smuggled dino eggs gave birth to ‘baby dragons’


In the early 1990s, scientists discovered an unusual cache: a set of large, thick-shelled fossil eggs topped by a single dinosaur embryo, previously entombed in rocks smuggled out of the Henan province of China. After the fossils were recovered and ultimately returned, scientists carefully analyzed the embryo—nicknamed “Baby Louie”—and determined that the 90-million-year-old remains represent a new species of giant oviraptorosaur, which they dubbed Beibeilong sinensis (“baby dragon from China”), they report today in Nature Communications. Whereas the embryo measured a mere 38 centimeters from its snout to the base of its tail, adults of the species (above) were no lightweights. B. sinensis likely stood about 3.5 meters tall at the hip and weighed in at about 1.4 metric tons, the researchers estimate. The finding means that Baby Louie isn't the only fossil to gain an identity: The same fossil eggs that were found with him, known as Macroelongatoolithus, are commonly unearthed at dig sites across Asia and North America, but paleontologists previously didn’t know what types of creature laid them. Although the fossil record of giant oviraptorosaurs is sparse, based on the wealth of Macroelongatoolithus that are known it now seems that giant oviraptorosaurs were common creatures during the Cretaceous period. 
Southern Fried Chicken

Artificial chicken grown from cells gets a taste test—but who will regulate it?

The quest for artificial meat inches forward—the company Memphis Meats announced today it has developed chicken and duck meat from cultured cells of each bird, producing “clean poultry.” The firm provided few details, although participants at a tasting reportedly said the chicken tasted like, well, chicken. Below is a repost of a story originally published 23 August 2016 on some of the regulatory challenges and questions facing Memphis Meats and other companies pursuing artificial meats.

The first hamburger cooked with labmade meat didn’t get rave reviews for taste. But the test tube burger, rolled out to the press in 2013, has helped put a spotlight on the question of how the U.S. government will regulate the emerging field of cellular agriculture, which uses biotechnology instead of animals to make products such as meat, milk, and egg whites.

So far, none of these synthetic foods has reached the marketplace. But a handful of startup companies in the United States and elsewhere are trying to scale up production. In the San Francisco Bay area in California, entrepreneurs at Memphis Meats hope to have their cell-cultured meatballs, hot dogs, and sausages on store shelves in about 5 years, and those at Perfect Day are targeting the end of 2017 to distribute cow-free dairy products. It’s not clear, however, which government agencies would oversee this potential new food supply.

Historically, the U.S. Department of Agriculture (USDA) regulates meat, poultry, and eggs, whereas the Food and Drug Administration (FDA) oversees safety and security for food additives. FDA also approves so-called biologics, which include products made from human tissues, blood, and cells, and gene therapy techniques. But emerging biotechnologies may blur those lines of oversight, because some of the new foods don’t fit neatly into existing regulatory definitions. “Cellular culture raises a lot of questions,” says Isha Datar, CEO of New Harvest, a New York City–based nonprofit founded to support this nascent industry.

To help provide answers, the White House last year launched an initiative to review and overhaul how U.S. agencies regulate agricultural biotechnology. And the National Academies of Sciences, Engineering, and Medicine in Washington, D.C., is working on a broader study of future biotechnology developments and regulation, with a report slated for release at the end of this year. (Editor's Note: The report was released on March 9, 2017)

In the meantime, industry leaders are thinking about how their potential lab-based foods might be handled by regulators. One approach, they tell ScienceInsider, is to show that their product is similar to an existing product that testing has already shown to pose no hazards. “Most food regulation is about aligning new products with something that’s already recognized as safe,” Datar notes. 

That’s the approach already taken by companies that use microbes and other biotechnologies to produce enzymes and proteins that are added to foods, notes Vincent Sewalt, senior director, product stewardship and regulatory, for DuPont Industrial Biosciences, based in Palo Alto, California. For example, yeast can be used to produce specific amylases, which are enzymes added to baked goods to prolong freshness. Such additives require premarket approval from FDA “unless you can demonstrate they are substances generally recognized as safe,” Sewalt says. To meet that standard—known in the industry as GRAS—companies start by selecting microbial strains that are known to be nontoxigenic and nonpathogenic, then use those strains to produce their products. “And that can be safely done as long as you’ve selected a safe strain and demonstrated that safety through repeated toxicology studies,” Sewalt says.

That strategy might also work for companies experimenting with using engineered yeast to produce single proteins to create egg whites, without cracking open a chicken's egg. In this case, egg white proteins are already considered to be a GRAS ingredient.

The same scenario might also work for Perfect Day, the startup that’s using yeast to make milk proteins, and then adding other ingredients to create a cow-free “milk.” Those milk proteins, caseins and whey, are already recognized as safe because they’re identical to the milk proteins we get from cows, says Datar, also a founder of the company.

The product can’t legally be called milk, however, because FDA has standards of identity that specifically define milk as lacteal secretions from a cow. “That definition completely leaves out any kind of beverage produced by fermentation or other tools of molecular biology,” says Phillip Tong, former director of the Dairy Products Technology Center and professor emeritus at California Polytechnic State University, San Luis Obispo. “When these definitions were promulgated, nobody ever thought we’d be able to do something like this,” he adds.

Meaty complications
The regulatory situation gets more complicated with cell-cultured meat, in which cells taken from animal muscle are grown on special scaffolds until they form enough tissue strands (about 20,000) to make a meatball or hamburger. It is not quite animal, not exactly a food additive—yet intended as food.

“It’s uncharted territory,” says Nicole Negowetti, policy director for the Good Food Institute, a Washington, D.C., nonprofit that supports cultured and plant-based food alternatives. For example, “from my understanding, the USDA regulations are based on food from animal slaughter, so [they don’t] make sense for these products,” she says.

Although cellular agriculture advocates tend to dwell on the process—because they say it could lead to safer, more humane, and more sustainable food production—FDA looks only at the final product. So, whether the end product is genetically modified corn, soybean, or maybe meat, Negowetti says the product should be regulated by FDA if it is meant to be a food.

But meat from cell cultures could also fall under FDA oversight for drug manufacturing, she notes. Because FDA defines a drug as something that includes human cells, tissues, and tissue-based products, it might not be so much of a stretch to say animal tissue could be included in that definition, too, she adds.

There also could be arguments made for regulating cell-cultured meat under FDA’s New Animal Drug Application process. Under this scheme, the agency regulates drugs given to animals or added to their food. So if companies manipulate meat cultures to improve the flavor, fat content, or other qualities, that could be considered the same as giving a drug to an animal.

Safety advantages?
Although biotechnology may make it harder to define new food products, it could also facilitate more precise safety measures, DuPont’s Sewalt says. For instance, he says that as genome sequencing becomes faster, so could the process of figuring out whether gene insertions or deletions in new organisms pose health risks or other concerns. There’s also the possibility of explicitly designing in safety, such as by engineering egg white proteins so they don’t trigger allergic reactions. And, in the future, the potential to insert barcodes in genes and the development of in-line ID kits, that recognize specific strains of cell lines, could make it easier to verify new organisms and their protein products, and track products through supply chains.

For the moment, however, which government agencies will oversee these changes remains unclear. As biotech creates more overlap among regulatory systems, Datar suggests it would be ideal to create a single regulatory agency. “Right now,” she says, “our system is set up in a way that promotes imitation as opposed to innovation.”


Global health spending good for U.S. security and economy, National Academies say

If a serious infectious disease blossomed across the globe today, the U.S. death toll could be double that of all the casualties suffered in wars since the American Revolution. Those 2 million potential American lives lost to a global pandemic is just one sobering statistic cited in a new report released today by the U.S. National Academies of Sciences, Engineering, and Medicine that urges sustained U.S. spending on global health initiatives. It also calls on the federal government to develop a new “International Response Framework” to guide the nation’s preparation and reaction to intercontinental epidemics and global pandemics.

“While global crises have largely been avoided to date, the lack of a strategic [U.S.] approach to these threats could have grave consequences,” the report warns. “If the system for responding to such threats remains reactionary, the world will not always be so lucky.”

The next epidemic—whether from nature or bioterrorism—is a question of “when,” not “if,” according to the authors of the report, titled Global Health and the Future Role of the United States. They say the 313-page tome is intended to send a strong message that investing in public health beyond U.S. borders is more than a philanthropy project; it’s also a matter of economic stability and national security here at home.

“I have long argued that it is not just being altruistic to address these issues on a global basis, because sooner or later [they] will impact us,” says Michael Osterholm, the director of the Center for Infectious Disease Research and Policy at the University of Minnesota in Minneapolis and a member of the panel that wrote the report. (Osterholm has also recently written that President Donald Trump’s proposed budget cuts to the National Institutes of Health miss the mark on “the greatest national security threat of all: our fight against infectious disease.”)

The report’s authors make 14 recommendations for intervening in global health across four broad areas: prepping for global disease outbreaks; sustaining funds for responding to AIDS, tuberculosis, and malaria; improving women’s and children’s health; and reducing incidence of cardiovascular disease and cancers in low- and middle-income countries. It also calls for “the creation of an International Response Framework to guide the U.S. response to an international health emergency.”

Osterholm tells ScienceInsider that the structure of such a framework was left intentionally open-ended, to give officials leeway to think about how to avoid duplication of effort and wasted resources. Federal law already enables U.S. agencies to respond to domestic disease outbreaks, Osterholm notes, but “it is more complicated when you get into other countries.”

For example, at the height of national concern several years ago about the Ebola virus outbreak in West Africa, former President Barack Obama named a temporary “Ebola czar” to oversee the U.S. response. But report author Michael Merson, director of the Duke Global Health Institute in Durham, North Carolina, says the United States needs to “have a more stable system or framework in place so we would not have to do things on an ad hoc basis in the future.”

The report also argues that steady federal spending on disease preparedness—rather than the reactive and often delayed infusions of funds prompted by the recent Ebola and Zika virus outbreaks—would save money and increase effectiveness over the long haul. The report notes that even a “moderate influenza pandemic” that reduces global economic output by 2% could cost the world economy between $570 billion to $2 trillion.

Good health can also equal greater political stability, the authors argue. “When one thinks of global health, one often thinks of disease, humanitarian needs, and the moral imperative,” Merson says. “But now there is evidence that countries with good health are more secure and have less terrorism. So we tried to explain the benefits of global health from various perspectives: It is an economic issue, it is good for markets, it is important for diplomacy.”

The report comes as the Trump administration has proposed deep cuts in public health and foreign aid programs in the 2018 fiscal year that begins 1 October. Key members of Congress have been cool to those proposals, but final spending levels are not expected to be set until late this year at the earliest.



Possible Trump pick for USDA science post draws darts

President Trump may be adding to his administration's challenges by picking someone without a science background to head the U.S. Department of Agriculture's (USDA's) research programs, former agriculture secretary Dan Glickman said today.

The Clinton administration official told E&E News that, while he doesn't know Sam Clovis — reported to be Trump's pick for undersecretary for research, education and economics — scientific knowledge is especially useful in a position that requires coordination with scientific agencies within the government.

"Not to have someone with a scientific background in that position is going to be challenging for them," Glickman said.
Clovis' likely nomination, reported by the farm magazine Agri-Pulse and ProPublica, raised caution among advocates for agricultural research, who say they worry the administration will pay less attention to the effects of climate change on wheat and other vital crops, among other issues. The position is one of the key undersecretary slots at the department, groups involved in agricultural science said.
"He's a political hack. He's a political talk show host," said a representative of one group that advocates for some of the programs Clovis would oversee, who requested that his name be withheld because of ongoing work with the agency.
While the position demands either scientific background or problem-solving skills in a big bureaucracy, this advocate said, "he's not either of those."

Not to have someone with a scientific background in that position is going to be challenging for them.
Dan Glickman, former secretary of agriculture


Clovis, 67, was a co-chairman of Trump's campaign and a top adviser on agricultural issues. He's from Sioux City, Iowa, and is a former college economics professor and conservative talk radio host. He has a doctoral degree in public administration from the University of Alabama.

He joined the Trump campaign in the summer of 2015, switching from Rick Perry's campaign, and helped Trump build support among conservative, rural voters in Iowa who remembered Clovis' own run for U.S. Senate there (Greenwire, Nov. 7, 2016).

Glickman said that he doesn't know Clovis but that the lack of background in the issues he would handle stands out. Responsibilities include research on crop pests and diseases, the effects of pesticides, and the response to animal diseases such as avian flu — which has been on the rise. He would interact on a regular basis with scientifically savvy officials at the National Institutes of Health and other agencies and would need to understand the language, Glickman said.

"The whole agricultural world depends on this," said Glickman, who serves on the board of directors of the Foundation for Food and Agriculture Research.

"I wouldn't be qualified for that job, I don't think," Glickman said.

While the choice of Clovis is clearly a break from past administrations, the most important qualification may be a good understanding of agriculture and the workings of the federal land grant college system, where much of the publicly supported research is done, said Lee Van Wychen, science policy director for the Weed Science Society of America.

As long as Clovis demonstrates that kind of knowledge to WSSA members, "I think that'd be OK with them," Van Wychen said.

And while his advanced degree isn't in science, "it's not as if he's completely out of the loop in higher education," Van Wychen said.

The undersecretary's position requires Senate confirmation.

Clovis has built support among farm groups in Iowa.

"At first blush, it would seem like a good fit for Sam," said Monte Shaw, executive director of the Iowa Renewable Fuels Association, who once tried to recruit Clovis to write a research paper for the organization. "He is incredibly intelligent and has an academic background."

The choice of Clovis reflects a wider approach in the administration that steers away from scientists, said Rush Holt, executive director of the American Association for the Advancement of Science (AAAS) and a former Democratic congressman from New Jersey.

"It's not just about having a science adviser. It's having science present in each agency, at all levels," Holt said.




Million-dollar Strads fall to modern violins in blind ‘sound check’

Perhaps no name conveys superiority quite like Stradivarius. The roughly 650 extant violins fashioned by Italian luthier Antonio Stradivari (1644–1737) and his family are worth millions, and they’re thought to outshine even the best modern instruments. But in a pair of "double-blind" tests, in which neither musician nor audience knew which instrument was played, listeners clearly preferred the new fiddles to the old classics.

"The work is terrific," says Christopher Germain, a violinmaker in Philadelphia, Pennsylvania, and a member of the board of the Violin Society of America, who was not involved in the study. "I think it's really helpful to everybody to cut through the folklore and b.s. and focus on what we're hearing."

For more than a century, violins crafted by Stradivari and members of his family have been thought to possess acoustic qualities that new violins simply can’t match. (Violins fashioned contemporaneously by members of the Gaurneri family are similarly revered.) For just as long, aficionados have sought Stradivari's secret—was it his varnish or the type of wood he used? None of the countless suggestions has drawn a consensus. Nevertheless, the price of a Stradivarius keeps soaring. In 2011, the “Lady Blunt” Strad sold for $15.9 million.

But some scientists and violinmakers question whether Strads and other "Old Italians" really have superior acoustic qualities. For decades, blind comparisons have shown that listeners cannot tell them from other violins, and acoustic analyses have revealed no distinct sonic characteristics. In 2014, Claudia Fritz, a musical acoustician at Pierre and Marie Curie University in Paris, and Joseph Curtin, a leading violinmaker in Ann Arbor, Michigan, reported that in a double-blind test with 13 modern instruments and nine Old Italians, 10 elite violinists generally preferred the new violins to the old.

Now, the team has shown that listeners also prefer new instruments—at least when considering a specific small set of fine violins. The researchers started by looking at a quality considered unique to Strads: They are supposed to sound quieter “under the ear" of the violinist, but project better into the concert hall “as if somehow the inverse-square law were reversed," Curtin says, referring to how the loudness of a sound decreases as the distance from the source increases.

The first listener test took place in Vincennes, a suburb of Paris. Researchers gathered three Strads and three top-quality modern violins. An elite violinist played the same musical excerpt—for example, five measures from Tchaikovsky's Violin Concerto Opus No. 35—on each of the nine possible pairings of violins. Then, a second violinist played a different excerpt on all the pairs, with the order scrambled. The violinists wore modified welding goggles, so they couldn’t tell whether they were playing old or new instruments.

As the violins played solo and with orchestral accompaniment, 55 listeners rated which instrument in each pair projected better by making a mark on a continuous scale with one violin, labeled simply A, on one end and the other violin, labeled B, on the other. The researcher then averaged all those evaluations, and found that subjects generally thought the new violins projected better than the old ones—although the researcher left it up to listeners to decide what that meant. The effect was unambiguous, Fritz says.

The team then performed a similar test in New York City without the orchestra and with a different set of Strads and new violins. Again, the 82 listeners in the test reported that the new violins projected better. This time, Fritz and colleagues asked subjects which of the two violins in a pairing they preferred. Listeners chose the new violins over the old, they reported yesterday in the Proceedings of the National Academy of Sciences. The New York City study also showed that listeners' preferences correlated with their assessment of projection, suggesting the loudness of an instrument may be a primary factor in the quality of its sound.

So, will the study cause Strad prices to plummet? No, Curtin says, as the value of the instruments is based on much more than just their sound. But it does suggest that violinists can get a top-quality instrument without spending a fortune on an Old Italian, he says. (The record price for an instrument by a modern maker is a relatively cheap $132,000.) "It's good news for players," Curtin says.

The finding also leaves open the possibility that Strads do sound better than modern instruments under certain circumstances—when the listener knows they are hearing a legendary instrument. "If you know it's a Strad, you will hear it differently," Fritz says. "And you can't turn off that effect."

As for Stradivari's secret, the whole notion is misguided, Germain says. "Stradivari's secret was that he was a genius and that he did a thousand things right, not one thing right," Germain says. Saying his success came down to just one trick is, Germain says, "like saying that if I had the same kind of paint as Michelangelo, I could have painted the Sistine Chapel."


Departure of U.S. Census director threatens 2020 count



Departure of U.S. Census director threatens 2020 count


John Thompson is stepping down next month as director of the U.S. Census Bureau. His announcement today comes less than 1 week after a congressional spending panel grilled him about mounting problems facing the agency in preparing for the 2020 decennial census. And Thompson’s pending retirement is weighing heavily on the U.S. statistical community.

Thompson is leaving halfway through a 1-year extension of a term that expired last December. His departure will create what a 2012 law was expressly designed to avoid—a leadership vacuum during a crucial time in the 10-year life cycle of the census, the nation’s largest civilian undertaking. The immediate concern is who the Trump administration will appoint, and how soon it will act.

“The key is to act expeditiously,” says Phil Sparks, co-director of The Census Project, a Washington, D.C.–based advocacy organization. “The normal length of time to fill a vacancy [with a nomination] is 6 months, but the Census Bureau doesn’t have the luxury of time.”
Ken Prewitt, who led the agency from 1998 to 2001, worries that a long delay in naming a well-qualified replacement for Thompson could be the first step of a long, steep decline in the quality of the federal statistic system, which spans 13 agencies. “That system is fragile, and it wouldn’t take much to damage it severely,” says Prewitt, a professor of social affairs at Columbia University. “My real fear is that they don’t care enough to do a good job with the 2020 census. And then after doing a bad job, they decide to let the private sector take over.”

A more modern census

A former 27-year veteran of the agency, Thompson returned as director in August 2013 after leading NORC, a public opinion research firm based in Chicago, Illinois. He immediately drew up plans to modernize the 2020 census in a way that would also allow it to meet a congressional mandate to hold the 2020 census to no more than the $12.5 billion cost of the 2010 enumeration.
Thompson has said repeatedly those changes will save an estimated $5 billion. But that estimate has begun to look shaky for reasons within and outside his control.
The cost of a new tracking system being developed for the next census is almost twice its initial half-a-billion-dollar budget, Thompson said last week before the commerce, justice, and science appropriations subcommittee in the U.S. House of Representatives. And that was just the first of several pieces of bad news at the 3 May hearing. Officials from the Government Accountability Office, a congressional watchdog agency, told legislators they feared a billion-dollar overrun in the agency’s overall IT programs, an essential element in mounting a successful census. Even more disconcerting, they said, were the agency’s repeated delays in updating cost estimates made in 2015.
Thompson’s rare appearance before the House spending panel underscored the agency’s tenuous budget situation. The Census Bureau’s budget historically spikes in the 2 to 3 years before the next census. But its prospects of getting such a large hike this time around are bleak. A final spending bill enacted last week provided less than half its requested $263 million increase for 2017. And President Donald Trump has said he’ll ask for essentially a flat budget in 2018.
Without a financial rampup, however, census officials won’t be able to vet all the new systems planned for 2020. And any stumbles will likely cost the government a lot more money to fix down the road.

Who’s next?

Thompson says he timed his departure to give his boss, Commerce Secretary Wilbur Ross, and the White House “sufficient time to put in the proper leadership to guide the Census Bureau through the 2017 Economic Census, the 2020 Census and beyond.” But media reports say Ross was unhappy with Thompson’s performance at last week’s hearing and shared his displeasure with the director.
Prewitt speculates that a Trump appointee might have an easier time convincing a Republican-led Congress to allocate the additional money needed to ensure that the 2020 census is successful. “If you see your budget cut in 2017 and think you’re not going to do any better in 2018,” Prewitt says, “you might decide that the Bureau would be better off with somebody new.”
The Census director has traditionally been a longtime agency official or a well-respected academic. Census watchers don’t think an insider will get the job. “Right now they don’t have a strong bench,” says Smith, noting that the agency’s deputy director, Nancy Potok, was recently named chief statistician at the White House Office of Management and Budget and that her position is vacant.
That leaves someone from the community as the most likely choice. “It’s a large organization, but it’s fundamentally a scientific agency,” says Ronald Wasserstein, executive director of the American Statistical Association based in Alexandria, Virginia. “So the new director needs to be someone with strong management and scientific skills.”
The new director also needs to command respect, says Terri Ann Lowenthal, a former House staffer director for the census panel and now a census consultant in Connecticut. “Maintaining public confidence in the integrity of the process will determine, to a large degree, faith in the results,” she says. “It is vital that the next director not be viewed as partisan or lacking an appreciation for the value of objective, reliable statistics to inform decision-making.”

Marine Le Pen is a ‘terrible danger,’ French research leaders say



Marine Le Pen, the candidate of the National Front, celebrating results from the first election round on 23 April.

Marine Le Pen is a ‘terrible danger,’ French research leaders say

The French science and higher education community appears virtually united in its opposition against Marine Le Pen, the far-right candidate who could become France’s next president during the second round of elections on 7 May. In an unprecedented letter issued yesterday, the directors of nine major public research institutes describe Le Pen’s candidacy as a “terrible danger” and call on voters not to support her.
“The program of Ms Le Pen promises recession and decline on all fronts: economic, social, and of course scientific,” the nine say in the statement, which was sent to French news agency AFP yesterday. Among the signatories are the directors of the national research agency CNRS, the National Institute of Health and Medical Research, and the National Institute for Agricultural Research.
Le Pen, the candidate of the National Front, won 21.3% of the vote in the first round on 23 April, slightly less than political newcomer and pro-European centrist Emmanuel Macron, who got 24%. (France’s traditional parties all did worse, as did a far-left candidate.) Macron and Le Pen have sketchy programs on science, but their world views could not be farther apart. Le Pen’s proposals to curtail immigration and take France out of European treaties are very unpopular in academic circles.
“French science … would not survive a withdrawal behind our frontiers and restrictions to the circulation of brains and ideas. On an endless number of topics, [including] migration, health, the environment, and even the history of our country, the ideas disseminated by the National Front are in open contradiction with undeniable evidence established by research and with the necessary autonomy of the scientific community,” the institute directors write in their statement, which does not explicitly endorse Macron.
Others have sounded the alarm as well. On Tuesday, the Conference of University Presidents called for a vote “against the extremism” of Le Pen’s candidacy, and defended “the values of universality, tolerance, and openness to others.” Several university presidents have encouraged their staff and students to vote against Le Pen, newspaper Le Monde writes today; on Wednesday, the paper reported that four historians and social scientists supported Macron.
Opinion polls currently give Macron a clear but decreasing advantage. But there is a chance that abstention by disgruntled voters could tilt the results in Le Pen’s favor, physicist and CNRS researcher Serge Galam in Paris-who predicted Brexit and the victory of Donald Trump-warned in an interview with Le Point on Wednesday. The nine institute directors agree. “The 7 May election is not a foregone conclusion,” they write.